Match details
| Record ID: |
AJ430934.1 |
| Database: |
nt |
Go to original record |
| Description: |
Myoporum montanum chloroplast tRNA-Leu gene for transfer RNA-Leu and partial tRNA-Phe gene for transfer RNA-Phe |
| Taxon: |
Myoporum montanum |
| Original size: |
1309 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
353 |
916 |
+ |
564 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 agcgaaaaaa aaaaggatag gtgcagagac tcaatggaag ctgttctaac
201 aaatggagtt gactgcgttg gtagaggaat ctttccatcg aaacttcaga
251 aaggatgaag gataaaggta tatattgaat actatatcaa atgattaatg
301 atggccctaa tctgtatctg tattttttta tatgaaaaat ggaagaattg
351 gtatgaagtg attccacatt gaagaaagaa tcaaatattc cttcatcaaa
401 tcattcactc cacagtctga tagttctttt aaagaactga ttaatcggac
451 aagaataaag atagagtccc attctacatg tcaatattgg caacaatgca
501 atttatagta agaggaaaat ccgtcgactt taaaagtcgt gagggttcaa
551 gtccctctat cccc
View other 9 matches with an identical amplicon
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
564 |
545 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
