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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AF430768.1 nt Cercis canadensis chloroplast tRNA-... 1068 bp Cercis canadensis QL-PLN-00-007 593 bp View
AF430769.1 nt Colvillea racemosa chloroplast tRNA... 1060 bp Colvillea racemosa QL-PLN-00-007 591 bp View
AF430770.1 nt Conzattia multiflora chloroplast tR... 1071 bp Conzattia multiflora QL-PLN-00-007 592 bp View
AF430771.1 nt Cordeauxia edulis chloroplast tRNA-... 1090 bp Cordeauxia edulis QL-PLN-00-007 603 bp View
AF430772.1 nt Delonix regia chloroplast tRNA-Leu ... 1064 bp Delonix regia QL-PLN-00-007 591 bp View
AF430773.1 nt Delonix decaryi chloroplast tRNA-Le... 1063 bp Delonix decaryi QL-PLN-00-007 590 bp View
AF430774.1 nt Diptychandra aurantiaca chloroplast... 1063 bp Diptychandra aurantiaca QL-PLN-00-007 590 bp View
AF430775.1 nt Gleditsia triacanthos chloroplast t... 1090 bp Gleditsia triacanthos QL-PLN-00-007 589 bp View
AF430776.1 nt Gymnocladus dioica chloroplast tRNA... 1066 bp Gymnocladus dioicus QL-PLN-00-007 583 bp View
AF430777.1 nt Haematoxylum brasiletto chloroplast... 1082 bp Haematoxylum brasiletto QL-PLN-00-007 591 bp View
AF430778.1 nt Lemuropisum edule chloroplast tRNA-... 1064 bp Delonix edule QL-PLN-00-007 591 bp View
AF430780.1 nt Mezonevron hildebrandtii chloroplas... 1083 bp Mezoneuron hildebrandtii QL-PLN-00-007 597 bp View
AF430781.1 nt Mora excelsa chloroplast tRNA-Leu (... 1045 bp Mora excelsa QL-PLN-00-007 592 bp View
AF430782.1 nt Moullava spicata chloroplast tRNA-L... 1103 bp Moullava spicata QL-PLN-00-007 605 bp View
AF430783.1 nt Pterolobium lacerans chloroplast tR... 1088 bp Pterolobium lacerans QL-PLN-00-007 603 bp View
AF430784.1 nt Parkinsonia aculeata chloroplast tR... 1058 bp Parkinsonia aculeata QL-PLN-00-007 585 bp View
AF430785.1 nt Peltophorum dubium chloroplast tRNA... 1084 bp Peltophorum dubium QL-PLN-00-007 592 bp View
AF430786.1 nt Schizolobium amazonicum chloroplast... 1058 bp Schizolobium amazonicum QL-PLN-00-007 601 bp View
AF430787.1 nt Stahlia monosperma chloroplast tRNA... 1072 bp Libidibia monosperma QL-PLN-00-007 586 bp View
AF430789.1 nt Stuhlmannia moavi chloroplast tRNA-... 1086 bp Stuhlmannia moavi QL-PLN-00-007 598 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.