Match details
| Record ID: |
AF430768.1 |
| Database: |
nt |
Go to original record |
| Description: |
Cercis canadensis chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
| Taxon: |
Cercis canadensis |
| Original size: |
1068 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
593 |
+ |
593 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acctactaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaacaaaga agagttcaga
151 aagtgagaat aaaaaggata ggtgcagaga ctcaatggaa gctgttctac
201 caaatggagt tgacggcatt tcgtttcgtt agtaaagtaa tccttccatc
251 aaaactccat aaaagaaagg atcaaagata aacgtatata tacgtatacc
301 taccgaaata ctatctcaac taaattaatg acgacgccga atctctattt
351 tttaatattt atatgagaaa tgaaagatgt aaatagattc aaagttgagg
401 aaaaagtcga atattcattc atcaaatcat tcactccatc atagtccgat
451 agatcttttg aagaactgat taatcggaca cgaataaaga tagagtccca
501 ttctacatgt caataccgac aacaatgaaa tttatagtaa gaggaaaatc
551 cgtcgacttt agaaatcgtg agggttcaag tccctctatc ccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.67e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
593 |
574 |
2.67e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
