Match details
| Record ID: |
AF430774.1 |
| Database: |
nt |
Go to original record |
| Description: |
Diptychandra aurantiaca chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
| Taxon: |
Diptychandra aurantiaca |
| Original size: |
1063 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
590 |
+ |
590 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgataacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaaga agagttcaga
151 aaggtagaat aaaaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgatgaca tttcgtttcg ctagtaaagg aatccttcca
251 tcgaaactcc agaaaagaaa ggatcaagga tgaacatacg tatacgtact
301 gaaatactat ttcaattgat tagaccagac agaccccaaa tccttttttt
351 aatatttata tgaccaatga aagatgtgaa tcgattccaa gttgaagaaa
401 gaatagaata ttcattgatc aaatcattca ctccatcata gtctgaaaga
451 tcttttgaag aactgattaa tcagacgaga ataaagatag agtcccattc
501 tacatgtcaa taccgacaac aatgaaattt ctagtaagag gaaaatccgt
551 cgactttaga aatcgtgagg gttcaagtcc ctctatcccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.66e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
590 |
571 |
2.66e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
