Match details
| Record ID: |
AF430775.1 |
| Database: |
nt |
Go to original record |
| Description: |
Gleditsia triacanthos chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
| Taxon: |
Gleditsia triacanthos |
| Original size: |
1090 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
589 |
+ |
589 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaaga agagttcaga
151 aagcgagaat aaaacaagga taggtgcaga gactcaatgg aagctgttct
201 aacaaatgga gttgacgaca tttcgtttcg ttagtaaagg aatccttcca
251 tctaaactcc agaaaagaaa ggatcaagga tgaacatata tatacgtata
301 cgtactgaaa tactatttca attgattaga ccccaaatct ctattttgtc
351 atatttatat gacaaatgaa agatgtgaat cgattccaag ttgaagaaag
401 aatcgaatat tcattgatca aatcattcac tccatcatag tctgatagat
451 cttttgaaga actgattaat cggacgagaa taaagataga gtcccattct
501 acatgtcaat accgacaaca atgaaattta tagtaagagg aaaatccgtc
551 gattttagaa atcgtgaggg ttcaagtccc tctatcccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.65e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
589 |
570 |
2.65e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
