Match details
Record ID: |
AF430787.1 |
Database: |
nt |
Go to original record |
Description: |
Stahlia monosperma chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
Taxon: |
Libidibia monosperma |
Original size: |
1072 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
586 |
+ |
586 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgataacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaaga agagttcaga
151 aagggagaaa aggataggtg cagagactca acggaagctg ttctaacaaa
201 tggagttgac gacatttcgt ttcgttagta aaggaatcct tccatcgaaa
251 ctccagaaaa gaaaggatca aggatgaaca tatatatacg tactgaaata
301 ttatttcaat tgattagacc agacagaccc caaatcccta ttttttaata
351 tttctatgac aaatgaaaga tttgaataga ttccaagttg aagaaagaat
401 cgaatattta ttgatcaaat cattcactcc atcatagtct gatagatctt
451 ttgaagaact gattaatcgg acgagaataa agatagagtc ccattctaca
501 tgtcaatacc gacaacaatg aaatttatag taagaggaaa atccgtcgac
551 tttagaaatc gtgagggttc aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.64e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
586 |
567 |
2.64e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.