Match details
Record ID: |
AF430769.1 |
Database: |
nt |
Go to original record |
Description: |
Colvillea racemosa chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
Taxon: |
Colvillea racemosa |
Original size: |
1060 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
591 |
+ |
591 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgataacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaaga agagttcaga
151 aggggagaat aaaaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgacgaca tttcgtttcg ttagtaaagg aatccttcca
251 tcgaaacccc agaaaagaaa ggatcaagga tgaacatacg tatagtactg
301 aaatactatt tcaattgatt agaccagaca gaccccaaat ctctattttt
351 tcatatttat atgagaaatg aaagatgtga atcgattcca agttgaagaa
401 agaatcgaat attcattgat caaatcattc actccatcat agtctgatag
451 atcttttcaa gaactgatta atcggacgag aataaagata gagtcccatt
501 ctacatgtta ataccggcaa caatgaaatt tatagtaaga ggaaaatccg
551 tcgactttag aaatcgtgag ggttcaagtc cctctatccc c
View other 9 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.66e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
591 |
572 |
2.66e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.