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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU220732.1 nt Salvia miltiorrhiza from China tRNA... 888 bp Salvia miltiorrhiza QL-PLN-00-007 529 bp View
EU220733.1 nt Salvia miltiorrhiza from China tRNA... 888 bp Salvia miltiorrhiza QL-PLN-00-007 529 bp View
EU220735.1 nt Salvia miltiorrhiza from China tRNA... 887 bp Salvia miltiorrhiza QL-PLN-00-007 528 bp View
EU220736.1 nt Salvia miltiorrhiza from China tRNA... 894 bp Salvia miltiorrhiza QL-PLN-00-007 531 bp View
EU220737.1 nt Salvia miltiorrhiza from China tRNA... 889 bp Salvia miltiorrhiza QL-PLN-00-007 530 bp View
EU220739.1 nt Salvia miltiorrhiza f. alba from Ch... 883 bp Salvia miltiorrhiza f. alba QL-PLN-00-007 524 bp View
EU401427.1 nt Centrolobium tomentosum voucher Wal... 1083 bp Centrolobium tomentosum QL-PLN-00-007 612 bp View
EU522178.1 nt Monoon coffeoides tRNA-Leu (trnL) g... 1003 bp Monoon coffeoides QL-PLN-00-007 576 bp View
EU522179.1 nt Hubera korinti tRNA-Leu (trnL) gene... 998 bp Huberantha korinti QL-PLN-00-007 576 bp View
EU522180.1 nt Monoon longifolium tRNA-Leu (trnL) ... 1008 bp Monoon longifolium QL-PLN-00-007 576 bp View
EU544013.1 nt Arthrocnemum macrostachyum isolate ... 1689 bp Arthrocaulon macrostachyum QL-PLN-00-007 600 bp View
EU544014.1 nt Arthrocnemum macrostachyum isolate ... 1687 bp Arthrocaulon macrostachyum QL-PLN-00-007 599 bp View
EU544015.1 nt Microcnemum coralloides subsp. cora... 1592 bp Microcnemum coralloides subsp. coralloides QL-PLN-00-007 616 bp View
EU544018.1 nt Microcnemum coralloides subsp. cora... 1592 bp Microcnemum coralloides subsp. coralloides QL-PLN-00-007 616 bp View
EU544019.1 nt Microcnemum coralloides subsp. anat... 1642 bp Microcnemum coralloides subsp. anatolicum QL-PLN-00-007 613 bp View
EU544020.1 nt Microcnemum coralloides subsp. anat... 1643 bp Microcnemum coralloides subsp. anatolicum QL-PLN-00-007 612 bp View
EU544021.1 nt Microcnemum coralloides subsp. anat... 1678 bp Microcnemum coralloides subsp. anatolicum QL-PLN-00-007 613 bp View
EU544022.1 nt Microcnemum coralloides subsp. anat... 1693 bp Microcnemum coralloides subsp. anatolicum QL-PLN-00-007 615 bp View
EU544023.1 nt Microcnemum coralloides subsp. anat... 1691 bp Microcnemum coralloides subsp. anatolicum QL-PLN-00-007 613 bp View
EU544024.1 nt Microcnemum coralloides subsp. anat... 1641 bp Microcnemum coralloides subsp. anatolicum QL-PLN-00-007 612 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.