Match details
Record ID: |
EU522178.1 |
Database: |
nt |
Go to original record |
Description: |
Monoon coffeoides tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Monoon coffeoides |
Original size: |
1003 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
577 |
+ |
576 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51 acctactaag tgagaacttc caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctgtgttcag aaaacaaggt tcagaaagcg
151 agaatcaaaa acagaaaaag gataggtgca gagactcaac ggaagctgtt
201 ctaacaaata gagtttactg cattggtagg gaaattcttt ccttctatcc
251 aaacgacaga aaggatgacc ttgtctacgt acgtatacat actgaaacat
301 caaacgatta atcacgactc gaatcagtct ttttttatat gaaaaatttc
351 agaatagaag gattgtgatt tgattccaag ttgaaggaag aatcgaatat
401 tcagagatca aatcattcat tcccgagtct aatagatctt tagaataact
451 gattaatcgg acgagaataa agatagagtc ccattctaca tgtcaataca
501 gacaacaatg aaatttatag taagaggaaa atccgtcgac tttaaaaatc
551 gtgagggttc aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.59e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
576 |
557 |
2.59e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.