Match details
Record ID: |
EU544023.1 |
Database: |
nt |
Go to original record |
Description: |
Microcnemum coralloides subsp. anatolicum isolate chen 682 trnL-trnT intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
Taxon: |
Microcnemum coralloides subsp. anatolicum |
Original size: |
1691 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
643 |
1255 |
+ |
613 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gcttgagcct tagtatggaa
51 acctactaag tgaaaacttt caaattcaga gaaaccctgg aattaaaaaa
101 aaagggcaat cctgagccaa ctcctttttt caaaataaaa aaaaggaaag
151 gataggtgca gagactcaaa ggaagttgtt ctaacaaatg gatttgggtt
201 gactgtgttg ttctaagaat tcttccgtca aaactccaat ctaaaaaggg
251 taaagaatat actatatcaa atgattaatg acaccccgaa tctattttgt
301 attttttttt ttcgaatttt ttagtattta ttatttctat atttaataga
351 aaagatgaaa ttctcgctaa ctaaaaattg cgaatatgaa atgaaaatat
401 atattatatg aataggaaaa aaacaaaggg aagaattttt gtgaatcgat
451 ttcaaattga aaaagaatca aatattcatt catcaaatca ttcactcccg
501 agaataaaga tagagtccca ttctacatgt caatactgac aagaatgcaa
551 tttatagtaa gaggaaaatc cgtcgacttt aaaaatcgtg agggttcaag
601 tccctctatc ccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.76e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
613 |
594 |
2.76e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.