Match details
Record ID: |
EU544018.1 |
Database: |
nt |
Go to original record |
Description: |
Microcnemum coralloides subsp. coralloides isolate chen 1460 trnL-trnT intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
Taxon: |
Microcnemum coralloides subsp. coralloides |
Original size: |
1592 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
538 |
1153 |
+ |
616 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gcttgagcct tagtatggaa
51 acctactaag tgaaaacttt caaattcaga gaaaccctgg aattcaaaaa
101 aaaaagggca atcctgagcc aactcctttt ttcaaaataa aaaaaaaaaa
151 ggaaaggata ggtgcagaga ctcaaaggaa gttgttctaa caaatggatt
201 tgggttgact gtgttgttgt aagaattctt ccgtcaaaac tccaatctaa
251 aaagggtaaa gaatatacta tatcaaatga ttaatgacac cccgaatcta
301 ttttgtattt ttttttttcg aattttttag tatttattat ttctatattt
351 aatagaaaag atgaaattct cgctaactaa aaatttcgaa tatgaaatga
401 aaatatatat tatatgaata ggaaaacaaa gggaagaatt tttgtgaatc
451 gatttcaaat tgaaaaagaa tcaaatattc attcatcaaa tcattcactc
501 ccgagaataa agatagagtc ccattctaca tgtcaatact gacaagaatg
551 caatttatag taagaggaaa atccgtcgac tttaaaaatc gtgagggttc
601 aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
616 |
597 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.