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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB235078.1 nt Vitis heyneana chloroplast DNA, trn... 985 bp Vitis heyneana QL-PLN-00-007 592 bp View
AB235084.1 nt Vitis sp. 8007 chloroplast DNA, trn... 1082 bp Vitis sp. 8007 QL-PLN-00-007 592 bp View
AB235085.1 nt Yua austro-orientalis chloroplast D... 1011 bp Yua austro-orientalis QL-PLN-00-007 592 bp View
AB235086.1 nt Yua austro-orientalis chloroplast D... 1006 bp Yua austro-orientalis QL-PLN-00-007 592 bp View
AB235090.1 nt Leea guineensis chloroplast DNA, tr... 1018 bp Leea guineensis QL-PLN-00-007 581 bp View
AB235092.1 nt Leea indica chloroplast DNA, trnL-t... 1019 bp Leea indica QL-PLN-00-007 581 bp View
AB235093.1 nt Leea indica chloroplast DNA, trnL-t... 1019 bp Leea indica QL-PLN-00-007 581 bp View
AC074232.11 nt Oryza sativa chromosome 10 BAC OSJN... 116932 bp Oryza sativa Japonica Group QL-PLN-00-007 615 bp View
AC092750.2 nt Oryza sativa Japonica Group cultiva... 134933 bp Oryza sativa Japonica Group QL-PLN-00-007 615 bp View
AC122148.1 nt Oryza sativa Japonica Group chromos... 125936 bp Oryza sativa Japonica Group QL-PLN-00-007 615 bp View
AF115481.1 nt Prunus salicina tRNA-Leu (trnL) gen... 598 bp Prunus salicina QL-PLN-00-007 587 bp View
AF148733.1 nt Georgeantha hexandra tRNA-Leu (trnL... 1018 bp Georgeantha hexandra QL-PLN-00-007 600 bp View
AF190399.1 nt Eucalyptus camaldulensis tRNA-Leu a... 808 bp Eucalyptus camaldulensis QL-PLN-00-007 580 bp View
AF190401.1 nt Eucalyptus pilularis tRNA-Leu and t... 776 bp Eucalyptus pilularis QL-PLN-00-007 552 bp View
AF278481.1 nt Anadenanthera colubrina trnL gene a... 1090 bp Anadenanthera colubrina QL-PLN-00-007 616 bp View
AF278484.1 nt Elephantorrhiza elephantina trnL ge... 1080 bp Elephantorrhiza elephantina QL-PLN-00-007 607 bp View
AF278497.1 nt Stryphnodendron guianense trnL gene... 1089 bp Stryphnodendron guianense QL-PLN-00-007 611 bp View
AF278509.1 nt Plathymenia reticulata trnL gene an... 1041 bp Plathymenia reticulata QL-PLN-00-007 586 bp View
AF327571.1 nt Abies alba tRNA-Leu (trnL) gene, in... 558 bp Abies alba QL-PLN-00-007 558 bp View
AF327572.1 nt Acer campestre tRNA-Leu (trnL) gene... 594 bp Acer campestre QL-PLN-00-007 594 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.