Match details
Record ID: |
AB235092.1 |
Database: |
nt |
Go to original record |
Description: |
Leea indica chloroplast DNA, trnL-trnF IGS, isolate: 7496, partial sequence. |
Taxon: |
Leea indica |
Original size: |
1019 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
581 |
+ |
581 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgggcct tggtatggaa
51 acctactaag tgataacttt caaattcagg gaaaccctgg aattacaaat
101 gggcaatcct gagccaaatc ctgttttccg aaaacaaaga agggttcaga
151 aaacgataat gaaaaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacaaatgg agttgactgt ggtgcgttgt taaaggaatc cttgcatcaa
251 aactccagaa aggatgaagg ataaacgtat atacatacgt acagaaatat
301 tatatcaaat gattaatgac agctcgaatc tgtgttttgt gatatgaaaa
351 atgaaagaat tgttgtaaat cgattccaag ttgaagaaag aaaagaatcg
401 aatattcatt gatcaaatca ttcactccat agtccgatag atcttttgaa
451 gaactgatta atcggacgag aataaagaga gagtcccatt ctacatgtca
501 ataccgacaa caatgaaatt tatagtaaga ggaaaatccg tcgactttaa
551 aaatcgtgag ggttcaagtc cctctatccc c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.62e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
581 |
562 |
2.62e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.