Match details
Record ID: |
AB235086.1 |
Database: |
nt |
Go to original record |
Description: |
Yua austro-orientalis chloroplast DNA, trnL-trnF IGS, isolate: 1315, partial sequence. |
Taxon: |
Yua austro-orientalis |
Original size: |
1006 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
593 |
+ |
592 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct taatatggaa
51 acctactaag tgataacttt caaattcagg gaaaccctgg aataaaaaat
101 gggcaatcct gagccaaatc ctgttttccg aaaccaagca agggttcaga
151 aaacgatcat aaaaaaagga taggtgcaga gactcaatgg aagctgttct
201 aacaaaaaca aatggagttg actatgttgc gttgttaaac gaatccttcc
251 atcaaaactc cagaaccaga aaggatgaag gataaaccta tatacatagg
301 tactgaaata ttatatcaaa tgattcatga tggctcgaat ctgtattttt
351 tgatatgaaa aatgaaagaa ttgttgtaaa tcgattccaa gttgaagaac
401 gaaaagaatc gaatattcat tgatcaaatc attcactcca tagtccgata
451 gatcttttga agaactgatt aatcggacga gaataaagat agagtcccat
501 tctacatgtc aataccgaca acaatgaaat ttatagtaag aggaaaatcc
551 gtcgactttt aaaatcgtga gggttcaagt ccctctatcc cc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.67e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
592 |
573 |
2.67e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.