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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MW770447.1 nt Alstonia mairei chloroplast, comple... 178195 bp Alstonia mairei QL-PLN-00-007 566 bp View
MW770448.1 nt Bambusa beecheyana var. pubescens c... 139458 bp Bambusa beecheyana var. pubescens QL-PLN-00-007 613 bp View
MW770449.1 nt Bistorta coriacea chloroplast, comp... 158839 bp Bistorta coriacea QL-PLN-00-007 603 bp View
MW770458.1 nt Phlomoides szechuanensis chloroplas... 151872 bp Phlomoides szechuanensis QL-PLN-00-007 560 bp View
MW770459.1 nt Phlomoides szechuanensis chloroplas... 151867 bp Phlomoides szechuanensis QL-PLN-00-007 555 bp View
MW770460.1 nt Senecio asperifolius chloroplast, c... 150047 bp Senecio asperifolius QL-PLN-00-007 523 bp View
MW774642.1 nt Callitriche palustris chloroplast, ... 150138 bp Callitriche palustris QL-PLN-00-007 572 bp View
MW783683.1 nt Veronica undulata voucher 20200709 ... 151178 bp Veronica undulata QL-PLN-00-007 568 bp View
MW788028.1 nt Callicarpa integerrima var. chinens... 154179 bp Callicarpa integerrima var. chinensis QL-PLN-00-007 562 bp View
MW801448.1 nt Cucurbita ficifolia chloroplast, co... 157631 bp Cucurbita ficifolia QL-PLN-00-007 582 bp View
MW802189.1 nt Wenchengia alternifolia isolate HN ... 152961 bp Wenchengia alternifolia QL-PLN-00-007 571 bp View
MW802212.1 nt Strobilanthes sp. RMRNR-2022a vouch... 144616 bp unidentified QL-PLN-00-007 550 bp View
MW829279.1 nt Callicarpa macrophylla chloroplast,... 154141 bp Callicarpa macrophylla QL-PLN-00-007 562 bp View
MW829604.1 nt Ocimum tenuiflorum voucher MH178054... 151722 bp Ocimum tenuiflorum QL-PLN-00-007 544 bp View
MW853784.1 nt Lilium nepalense chloroplast, compl... 152206 bp Lilium nepalense QL-PLN-00-007 609 bp View
MW858153.1 nt Clerodendrum cyrtophyllum chloropla... 152004 bp Clerodendrum cyrtophyllum QL-PLN-00-007 565 bp View
MW861760.1 nt Marsdenia tenacissima chloroplast, ... 164482 bp Gongronemopsis tenacissima QL-PLN-00-007 541 bp View
MW874473.1 nt Phyllostachys edulis f. tubiformis ... 139678 bp Phyllostachys edulis f. tubiformis QL-PLN-00-007 614 bp View
MW900174.1 nt Lilium hansonii chloroplast, comple... 152668 bp Lilium hansonii QL-PLN-00-007 618 bp View
MW900176.1 nt Schizonepeta tenuifolia chloroplast... 151260 bp Schizonepeta tenuifolia QL-PLN-00-007 557 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.