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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MN480806.1 nt Fritillaria delavayi chloroplast, c... 151938 bp Fritillaria delavayi QL-PLN-00-007 607 bp View
MN488592.1 nt Meconopsis henrici isolate DLSY23 c... 153788 bp Meconopsis henrici QL-PLN-00-007 599 bp View
MN488594.1 nt Meconopsis punicea isolate DLSY25 c... 153287 bp Meconopsis punicea QL-PLN-00-007 600 bp View
MN508249.2 nt Physalis chenopodifolia chloroplast... 156900 bp Physalis chenopodiifolia QL-PLN-00-007 583 bp View
MN509267.1 nt Lilium speciosum var. gloriosoides ... 152912 bp Lilium speciosum var. gloriosoides QL-PLN-00-007 614 bp View
MN509269.1 nt Nomocharis aperta chloroplast, part... 138861 bp Lilium apertum QL-PLN-00-007 610 bp View
MN510463.1 nt Berberis amurensis var. latifolia c... 166513 bp Berberis amurensis var. latifolia QL-PLN-00-007 562 bp View
MN514858.1 nt Rheum acuminatum chloroplast, compl... 161655 bp Rheum acuminatum QL-PLN-00-007 610 bp View
MN520017.1 nt Salvia hispanica chloroplast, compl... 150980 bp Salvia hispanica QL-PLN-00-007 564 bp View
MN520021.1 nt Salvia officinalis chloroplast, com... 151135 bp Salvia officinalis QL-PLN-00-007 561 bp View
MN537809.1 nt Phyllostachys edulis cultivar pachy... 139678 bp Phyllostachys edulis QL-PLN-00-007 614 bp View
MN542395.1 nt Trichosanthes kirilowii chloroplast... 156794 bp Trichosanthes kirilowii QL-PLN-00-007 587 bp View
MN542403.1 nt Gynostemma 'burmanicum' chloroplast... 157153 bp Gynostemma burmanicum (nom. inval.) QL-PLN-00-007 610 bp View
MN556756.1 nt Saxifraga arachnoidea isolate MG160... 823 bp Saxifraga arachnoidea QL-PLN-00-007 612 bp View
MN556757.1 nt Saxifraga arachnoidea isolate MG160... 834 bp Saxifraga arachnoidea QL-PLN-00-007 612 bp View
MN556768.1 nt Saxifraga paradoxa isolate MG160716... 821 bp Saxifraga paradoxa QL-PLN-00-007 607 bp View
MN556770.1 nt Saxifraga prenja isolate MG16072937... 749 bp Saxifraga prenja QL-PLN-00-007 613 bp View
MN564922.1 nt Rheum acuminatum chloroplast, compl... 161306 bp Rheum acuminatum QL-PLN-00-007 604 bp View
MN564926.1 nt Rheum przewalskyi chloroplast, comp... 161740 bp Rheum przewalskyi QL-PLN-00-007 615 bp View
MN564927.1 nt Rheum pumilum chloroplast, complete... 161749 bp Rheum pumilum QL-PLN-00-007 611 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.