Match details
Record ID: |
MN509269.1 |
Database: |
nt |
Go to original record |
Description: |
Nomocharis aperta chloroplast, partial genome. |
Taxon: |
Lilium apertum |
Original size: |
138861 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
31559 |
32168 |
+ |
610 bp |
|
1 cgaaatcggt agacgctacg gacttgatta aattgagcct tggtatggaa
51 acctgctaag tgataacttc caaattcaga gaaaccccgg aattaaaaat
101 gggcaatcct gagccaaatc tttattttga gaaaaagggt ttaatttata
151 gtttttataa tataaaacta caataaaaaa agataggtgc agagactcaa
201 tggaagctgt tctaacgaat gaagttgatt acgttgcgct ggtagccgga
251 atccttctat caaaattacg gatgaggatg cccaccctat atacgtatat
301 atacatactg acatagtaaa cgattgatta atcgcggccc gaatccatta
351 taatatatat atatatgaaa aatttaagag ttattgtaaa tctattccat
401 attccaatca aagtttaagg aataatcgaa tattcagtga tcaaattatt
451 cattccagag tctgtataga tctttttaaa aactgattat tcggacgaga
501 ataaagagag agtcccattc tacgtgtcaa taccgacaac aatgaaattt
551 atagtaaaag gaaaatccgt cgactttata agtcgtgagg gttcaagtcc
601 ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.75e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
610 |
591 |
2.75e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.