Match details
Record ID: |
MN542403.1 |
Database: |
nt |
Go to original record |
Description: |
Gynostemma 'burmanicum' chloroplast, complete genome. |
Taxon: |
Gynostemma burmanicum (nom. inval.) |
Original size: |
157153 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49399 |
50008 |
+ |
610 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctttttccga aaacaaatca aataagggct
151 tcgaaagcga gaaaaaaaag ggtaggtgca gagactcaat ggaagctgtt
201 ctaacaaatg agttgactag gttgcgttag taaaggaatg aatccttcca
251 tcgaaactcc agaaaagatg aaagataaac gtatatacgt actgaaatac
301 tatttgatta atgacagccc gaatctctat tttttatagt tatctaaaaa
351 atgatatata tatataaaaa acgaattgtt attaatcgat tccaatatct
401 ccaggttgaa aaaagaatcg aatattcatt gatcaaatca tttactccat
451 catagtctga tagatctttt gaagaactga ttaatcagat gagaatagaa
501 taaagataga gtcccattct acatgtcaat accgacaaaa atgaaattta
551 tagtaagagg aaaatccgtc gacttaaaaa aatcgtgagg gttcaagtcc
601 ctctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.75e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
610 |
591 |
2.75e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.