Match details
Record ID: |
MN510463.1 |
Database: |
nt |
Go to original record |
Description: |
Berberis amurensis var. latifolia chloroplast, complete genome. |
Taxon: |
Berberis amurensis var. latifolia |
Original size: |
166513 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48147 |
48708 |
+ |
562 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51 acctactaag tgagaacttt caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctgttttcat aaaaaggtgg ttcagaaaga
151 aaaaaaaaag gataggtgca gagactcaat ggaagctgtt ctaacgaata
201 gggttgactg cgttggtcga ggaatctttc tatcgaaact ccggaaagga
251 tgaacctata tacgtacgta tttgtactga aatagcaaaa attaatgaga
301 tccgaatcca ttttttattt tatatgtata tgaaaaattt aaaatggatt
351 gtgaatcgat tccaaatgga aggaagaatc gaatattcgc cgatcaaatc
401 agtcactcta tggtctgata gttcttttga agaactaact tattggacga
451 gagtaaagat agagtcccgt tctacatgtc aataccgaca acaatgaaat
501 ttatagtaag aggaaaatcc gtcgacttta gaaatcgtga gggttcaagt
551 ccctctatcc cc
View other 6 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
562 |
543 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.