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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 562 bp 
1     cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51    acctactaag tgagaacttt caaattcaga gaaaccctgg aattaaaaat
101   gggcaatcct gagccaaatc ctgttttcat aaaaaggtgg ttcagaaaga
151   aaaaaaaaag gataggtgca gagactcaat ggaagctgtt ctaacgaata
201   gggttgactg cgttggtcga ggaatctttc tatcgaaact ccggaaagga
251   tgaacctata tacgtacgta tttgtactga aatagcaaaa attaatgaga
301   tccgaatcca ttttttattt tatatgtata tgaaaaattt aaaatggatt
351   gtgaatcgat tccaaatgga aggaagaatc gaatattcgc cgatcaaatc
401   agtcactcta tggtctgata gttcttttga agaactaact tattggacga
451   gagtaaagat agagtcccgt tctacatgtc aataccgaca acaatgaaat
501   ttatagtaag aggaaaatcc gtcgacttta gaaatcgtga gggttcaagt
551   ccctctatcc cc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
MN510463.1 nt Berberis amurensis var. latifolia c... 166513 bp Berberis amurensis var. latifolia QL-PLN-00-007 562 bp View
KM057376.1 nt Berberis amurensis var. quelpaerten... 166630 bp Berberis amurensis var. quelpaertensis QL-PLN-00-007 562 bp View
KM057377.1 nt Berberis amurensis var. latifolia c... 166645 bp Berberis amurensis var. latifolia QL-PLN-00-007 562 bp View
OR415857.1 nt Berberis amurensis isolate Ber_50_M... 166699 bp Berberis amurensis QL-PLN-00-007 562 bp View
OR415858.1 nt Berberis amurensis isolate Ber_69_M... 166601 bp Berberis amurensis QL-PLN-00-007 562 bp View
OR415861.1 nt Berberis amurensis isolate Ber_156_... 166708 bp Berberis amurensis QL-PLN-00-007 562 bp View
OR415862.1 nt Berberis amurensis isolate Ber_225_... 166652 bp Berberis amurensis QL-PLN-00-007 562 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.