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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ296500.1 nt Walafrida nitida chloroplast tRNA-L... 1751 bp Walafrida nitida QL-PLN-00-007 571 bp View
AJ296503.1 nt Cromidon decumbens chloroplast tRNA... 1610 bp Cromidon decumbens QL-PLN-00-007 571 bp View
AJ296505.1 nt Reyemia chasmanthiflora chloroplast... 1958 bp Zaluzianskya chasmanthiflora QL-PLN-00-007 578 bp View
AJ296506.1 nt Tetraselago longituba chloroplast t... 1836 bp Tetraselago longituba QL-PLN-00-007 579 bp View
AJ296511.1 nt Jamesbrittenia megadenia chloroplas... 1636 bp Jamesbrittenia megadenia QL-PLN-00-007 573 bp View
AJ296512.1 nt Manuleopsis dinteri chloroplast tRN... 950 bp Manuleopsis dinteri QL-PLN-00-007 566 bp View
AJ296514.1 nt Camptoloma lyperiiflorum chloroplas... 1668 bp Camptoloma lyperiiflorum QL-PLN-00-007 566 bp View
AJ296521.1 nt Lyperia antirrhinoides chloroplast ... 1704 bp Lyperia antirrhinoides QL-PLN-00-007 565 bp View
AJ307245.1 nt Moraea autumnalis chloroplast parti... 999 bp Moraea autumnalis QL-PLN-00-007 585 bp View
AJ307253.1 nt Moraea cedarmonticola chloroplast p... 1020 bp Moraea cedarmonticola QL-PLN-00-007 586 bp View
AJ307260.1 nt Moraea flaccida chloroplast partial... 980 bp Moraea flaccida QL-PLN-00-007 566 bp View
AJ307297.1 nt Moraea schimperi chloroplast partia... 975 bp Moraea schimperi QL-PLN-00-007 584 bp View
AJ307309.1 nt Moraea ventricosa chloroplast parti... 1015 bp Moraea ventricosa QL-PLN-00-007 584 bp View
AJ307310.1 nt Moraea verdickii chloroplast partia... 1015 bp Moraea verdickii QL-PLN-00-007 584 bp View
AJ307311.1 nt Moraea verecunda chloroplast partia... 1012 bp Moraea verecunda QL-PLN-00-007 575 bp View
AJ346918.1 nt Burttdavya nyasica chloroplast DNA ... 1731 bp Nauclea nyasica QL-PLN-00-007 570 bp View
AJ346935.1 nt Nauclea diderrichii chloroplast DNA... 1725 bp Nauclea diderrichii QL-PLN-00-007 570 bp View
AJ346941.1 nt Neonauclea forsteri chloroplast DNA... 1732 bp Neonauclea forsteri QL-PLN-00-007 571 bp View
AJ346944.1 nt Pausinystalia macroceras chloroplas... 1734 bp Corynanthe macroceras QL-PLN-00-007 571 bp View
AJ346945.1 nt Pausinystalia johimbe chloroplast D... 1731 bp Corynanthe johimbe QL-PLN-00-007 571 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.