Match details
Record ID: |
AJ346918.1 |
Database: |
nt |
Go to original record |
Description: |
Burttdavya nyasica chloroplast DNA for trnT-L-F region, specimen voucher Razafimandimbison 292 (MO, P, TAN) |
Taxon: |
Nauclea nyasica |
Original size: |
1731 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
752 |
1321 |
+ |
570 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aagggcaatc ctgagccaaa tcctgttttc cgaaaccaaa ggttcagaaa
151 gtgaaaaagg gataggtgca gagactcaac ggaagctgtt ctaacaaatg
201 gagttagatg cattagtaga gagatctttc catcaaaaat tcagaaagaa
251 tgaagtgaag gataaacgta tatacatacg tattgaatac tatatcaaat
301 gattaatgac gacccgactg aatctatatt tttatatatg aaaaacggaa
351 gaattggtgt gaatagattc cacgttgaag aaagaatcga atattcattg
401 atcaaatgat tcactccata gtctgataga tcttttcaag aactgattaa
451 tcggacgaga ataaagatag agtcccattc tacatgtcaa tgccggcaac
501 aatgaaattt atagtaagag gaaaatccgt cgactttaaa aatcgtgagg
551 gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
570 |
551 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.