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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
GU594554.1 nt Eriochloa punctata tRNA-Leu (trnL) ... 943 bp Eriochloa punctata QL-PLN-00-007 621 bp View
GU594555.1 nt Urochloa decumbens tRNA-Leu (trnL) ... 940 bp Urochloa decumbens QL-PLN-00-007 618 bp View
GU594556.1 nt Urochloa nigropedata tRNA-Leu (trnL... 801 bp Urochloa nigropedata QL-PLN-00-007 619 bp View
GU594557.1 nt Urochloa bovonei tRNA-Leu (trnL) ge... 951 bp Urochloa bovonei QL-PLN-00-007 620 bp View
GU594559.1 nt Urochloa jubata tRNA-Leu (trnL) gen... 950 bp Urochloa jubata QL-PLN-00-007 619 bp View
GU594560.1 nt Urochloa leersioides tRNA-Leu (trnL... 935 bp Urochloa leersioides QL-PLN-00-007 610 bp View
GU594561.1 nt Melinis repens tRNA-Leu (trnL) gene... 928 bp Melinis repens QL-PLN-00-007 619 bp View
GU594562.1 nt Rupichloa acuminata tRNA-Leu (trnL)... 942 bp Rupichloa acuminata QL-PLN-00-007 620 bp View
GU594563.1 nt Urochloa platynota tRNA-Leu (trnL) ... 936 bp Urochloa platynota QL-PLN-00-007 615 bp View
GU594565.1 nt Urochloa subulifolia tRNA-Leu (trnL... 951 bp Urochloa subulifolia QL-PLN-00-007 620 bp View
GU594566.1 nt Urochloa subquadripara tRNA-Leu (tr... 934 bp Urochloa subquadripara QL-PLN-00-007 617 bp View
GU594567.1 nt Urochloa lata tRNA-Leu (trnL) gene ... 888 bp Urochloa lata QL-PLN-00-007 617 bp View
GU594568.1 nt Urochloa setigera tRNA-Leu (trnL) g... 942 bp Urochloa setigera QL-PLN-00-007 620 bp View
GU594571.1 nt Brachiaria deflexa tRNA-Leu (trnL) ... 940 bp Urochloa deflexa QL-PLN-00-007 618 bp View
GU594572.1 nt Scutachne dura tRNA-Leu (trnL) gene... 943 bp Scutachne dura QL-PLN-00-007 620 bp View
GU594573.1 nt Eriochloa distachya tRNA-Leu (trnL)... 905 bp Eriochloa distachya QL-PLN-00-007 617 bp View
GU594574.1 nt Tricholaena monachne tRNA-Leu (trnL... 926 bp Tricholaena monachne QL-PLN-00-007 616 bp View
GU594576.1 nt Moorochloa malacodes tRNA-Leu (trnL... 929 bp Moorochloa malacodes QL-PLN-00-007 621 bp View
GU594577.1 nt Urochloa texana tRNA-Leu (trnL) gen... 939 bp Urochloa texana QL-PLN-00-007 618 bp View
GU818009.1 nt Helichrysum stoechas isolate 1164 t... 907 bp Helichrysum stoechas QL-PLN-00-007 528 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.