Match details
Record ID: |
GU594556.1 |
Database: |
nt |
Go to original record |
Description: |
Urochloa nigropedata tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Urochloa nigropedata |
Original size: |
801 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
620 |
+ |
619 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc cctcttttga aaaaacaagt gattctcaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaattg aagtaattac gttgtgttgg tagtggaact ccctcgaaat
251 tatagaaaga agggctttat acatctaata cacacgtata gatactgaca
301 tagcaaacga ttaatcacag aacccatatc ataatatagg ttctttattt
351 tttatttttt ttttagaatg aaattaggaa tgattatgaa atagaaaatt
401 ctgaattttt tgagaattat tgtgaatcca ttccaatcga atatttcata
451 atcaaatcct tcaactcatt gttttgagat ctttaaaaaa gtggattaat
501 cgaacgagga taaagagaga gtcccattct acatgtcaat actgacaaca
551 atgaaatttc tagtaaaagg aaaatccgtc gactttataa gtcgtgaggg
601 ttcaagtccc tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.79e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
619 |
600 |
2.79e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.