Match details
Record ID: |
GU594574.1 |
Database: |
nt |
Go to original record |
Description: |
Tricholaena monachne tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Tricholaena monachne |
Original size: |
926 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
617 |
+ |
616 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaacaagtg gttctcaaac
151 tagaacccaa aggaaaagga taggtgcaga gactcaatgg aagctgttct
201 aacgaatcga agtaattacg ttgtgttggt agtggaactc cctcgaaatt
251 ctagaaagaa gggctttata catctaatac acacatagat actgacatag
301 caaacgatta atcacagaac ccatatcata atataggttc cttattttat
351 attttttttt tagaatgaaa ttaggaatga ttatgaaata gaaaattctg
401 aattttttga gaattattgt gaatccattc caatcgaata ttgagtaatc
451 aaatccttca attcattgtt ttgagatatt ttaaaaagtg gattaatcga
501 acgaggataa agagagagtc ccattctaca tgtcaatact gacaacaatg
551 aaatttctag taaaaggaaa atccgtcgac tttataagtc gtgagggttc
601 aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
616 |
597 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.