Match details
Record ID: |
GU594560.1 |
Database: |
nt |
Go to original record |
Description: |
Urochloa leersioides tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Urochloa leersioides |
Original size: |
935 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
611 |
+ |
610 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc cctgttttga aaaaacaagt ggttctcaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatta cgttgtgttg gtagtggaac tccctcgaaa ttatagaaag
251 aagggcttta tacatctaat acacacgtat agatactgac atagcaaacg
301 attaatcaca gaacccatat cataatatag gttctttatt ttatattttt
351 tttttagaat gaaattagga atgattatga aatagaaaat tctgaatttt
401 tttagaatta ttgtgaatcc attccaatcg aatattgagt aatcaaatcc
451 ttcaactcat tgttttgaga tctttaaaaa agtggattaa tcgaacgagg
501 ataaagagag agtcccattc tacatgtcaa tactgacaac aatgaaattt
551 ctagtaaaag gaaaatccgt cgactttata agtcgtgagg gttcaagtcc
601 ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.75e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
610 |
591 |
2.75e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.