Match details
Record ID: |
GU594563.1 |
Database: |
nt |
Go to original record |
Description: |
Urochloa platynota tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Urochloa platynota |
Original size: |
936 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
616 |
+ |
615 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc cctcttttga aaaaacaagt ggttctcaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aagtaattac gttgtgttgg tagtggaact ccctcgaaat
251 tatagaaaga agggctttat acatctaata cacacgtata gatactgaca
301 tagcaaacga ttaatcacag aacccatatc ataatatagg ttctttattt
351 tatatttttt tagaatgaaa ttaggaatga ttatgaacta gaaaattctg
401 aatttttgag aatttttgtg aatccattcc aatcgaatat ttcataatca
451 aatccttcaa ctcattgttt tgagatcttt aaaaaagtgg attaatcaaa
501 cgaggataaa gagagagtcc cattctacat gtcaatactg acaacaatga
551 aatttctagt aaaaggaaaa tccgtcgact ttataagtcg tgagggttca
601 agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.77e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
615 |
596 |
2.77e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.