Match details
Record ID: |
GU594573.1 |
Database: |
nt |
Go to original record |
Description: |
Eriochloa distachya tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Eriochloa distachya |
Original size: |
905 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
618 |
+ |
617 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttaaaaaa aaacacaagt ggttctcaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aagtaattgc gttgtgttgg tagtggaact ccctcgaaat
251 tatagaaaga agggctttat atttatacat ctaatacaca cgtatagata
301 ctgacatagc aaacgattaa tcacagcata atataggttc tttattttat
351 atttttttta ttagaatgaa attaggaata attatgaaat aggaaattct
401 gaattttttg agaattattg tgaatccctt ccaatcgaat attgagtaat
451 caaatccttc aattcattgt tttgagatct ttaaaaaagt ggattaatcg
501 aacgaggata aagagagagt cccattctac atgtcaatac tgacaacaat
551 gaaatttcta gtaaaaggaa aatccgtcga ctttataagt cgtgagggtt
601 caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
617 |
598 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.