Match details
Record ID: |
GU594577.1 |
Database: |
nt |
Go to original record |
Description: |
Urochloa texana tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Urochloa texana |
Original size: |
939 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
619 |
+ |
618 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaacaagt ggttctcaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aagtaattac gttgtgttgg tagtggaact ccctcgaaat
251 tatagaaaga agggctttat acatctaata cacacgtata gatactgaca
301 tagcaaacga ttaatcacag aacccatatc ataatatagg ttctttattt
351 tatatttttt tttagaatga aattaggaat gattatgaaa tagaaaattc
401 tgaatttttt tagaattatt gtgaatccat tccaatcgaa tattgagtaa
451 tcaaatcctt caattcattg ttttgagatc tttaaaaaag tggattaatc
501 gaacgaggat aaagagagag tcccattcta catgtcaata ctgacaacaa
551 tgaaatttct agtaaaagga aaatccgtcg actttataag tcgtgagggt
601 tcaagtccct ctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
618 |
599 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.