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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
FJ150608.1 nt Myonima nitens voucher Friedmann 26... 1610 bp Ixora nitens QL-PLN-00-007 565 bp View
FJ150609.1 nt Myonima obovata voucher Friedmann 3... 1610 bp Ixora borboniae QL-PLN-00-007 565 bp View
FJ466463.1 nt Bursera tecomaca tRNA-Leu (trnL) ge... 1033 bp Bursera tecomaca QL-PLN-00-007 595 bp View
FJ466464.1 nt Canarium album tRNA-Leu (trnL) gene... 1031 bp Canarium album QL-PLN-00-007 593 bp View
FJ466467.1 nt Canarium decumanum tRNA-Leu (trnL) ... 1040 bp Canarium decumanum QL-PLN-00-007 602 bp View
FJ466468.1 nt Canarium harveyi tRNA-Leu (trnL) ge... 1030 bp Canarium harveyi QL-PLN-00-007 602 bp View
FJ466469.1 nt Canarium indicum tRNA-Leu (trnL) ge... 1030 bp Canarium indicum QL-PLN-00-007 602 bp View
FJ466470.1 nt Canarium littorale tRNA-Leu (trnL) ... 1035 bp Canarium littorale QL-PLN-00-007 603 bp View
FJ466471.1 nt Canarium madagascariense tRNA-Leu (... 1040 bp Canarium madagascariense QL-PLN-00-007 602 bp View
FJ466474.1 nt Canarium pilosum tRNA-Leu (trnL) ge... 1040 bp Canarium pilosum QL-PLN-00-007 602 bp View
FJ466477.1 nt Canarium vulgare tRNA-Leu (trnL) ge... 1030 bp Canarium vulgare QL-PLN-00-007 602 bp View
FJ466478.1 nt Canarium whitei tRNA-Leu (trnL) gen... 1040 bp Canarium whitei QL-PLN-00-007 602 bp View
FJ466479.1 nt Canarium zeylanicum tRNA-Leu (trnL)... 1031 bp Canarium zeylanicum QL-PLN-00-007 603 bp View
FJ466481.1 nt Protium madagascariense tRNA-Leu (t... 1058 bp Protium madagascariense QL-PLN-00-007 609 bp View
FJ466482.1 nt Santiria apiculata tRNA-Leu (trnL) ... 1041 bp Santiria apiculata QL-PLN-00-007 603 bp View
FJ466484.1 nt Trattinnickia cf. burserifolia Hoff... 1034 bp Trattinnickia cf. burserifolia Hoffman et al. 694 QL-PLN-00-007 596 bp View
FJ467933.1 nt Carica papaya transgenic cultivar R... 15595 bp Carica papaya QL-PLN-00-007 592 bp View
FJ467933.1 emblreltgn Carica papaya transgenic cultivar R... 15595 bp Carica papaya QL-PLN-00-007 592 bp View
FJ695405.1 nt Coprosma pumila isolate B43 trnT-tr... 1321 bp Coprosma pumila QL-PLN-00-007 586 bp View
FJ695419.1 nt Pentodon pentandrus isolate H38 trn... 1728 bp Pentodon pentandrus QL-PLN-00-007 593 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.