Match details
Record ID: |
FJ466464.1 |
Database: |
nt |
Go to original record |
Description: |
Canarium album tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Canarium album |
Original size: |
1031 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
593 |
+ |
593 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aataaaaaat
101 gggcaatcct gagccaaatc ctgttttacg agaacaaaca agggttcaga
151 acacgagaaa ggggataggt gcagagactc aatggaagct gttctaacaa
201 atggagttga ctgccttttt tggggaaaga aagcaaaatg aatccttcta
251 tccaatatcg aaactccata aaggatgaag gataagccta tatacactac
301 gtatacgtaa tgaaaaacta tctcaaaaat gacgaccaga atccgtattt
351 tttttatgaa aaaaagaaaa gaattgttgg gaatcgattc caagttgaag
401 aaagaatcga atattcattg atcaaatcat tcactccata gtctgatcga
451 tcttttcttt tgaataatcg gacgagaata aagatagagt cccattctac
501 atgtcaatag caataccggc aacaatgaaa tttatagtaa gaggaaaatc
551 cgtcgacttt agaaatcgtg agggttcaag tccctctatc ccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.67e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
593 |
574 |
2.67e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.