Match details
Record ID: |
FJ467933.1 |
Database: |
emblreltgn |
Go to original record |
Description: |
Carica papaya transgenic cultivar Rainbow beta-glucuronidase (uidA), coat protein, and neophosphotransferase genes, complete cds. |
Taxon: |
Carica papaya |
Original size: |
15595 bp |
View other 63 matches for this record
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
13987 |
14578 |
+ |
592 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctgttttacg agaacaaaca aaacaagagt
151 tcagaaagcg agaaaagggg gataggtgca gagactcaat ggaagctgtt
201 ctaacaaatg gagttcatta ccttgtgttg gtaaaggaat ccttctatcg
251 aacctccaga aaagatgaag ggataacctt atctaaatag gtataagtaa
301 tttaaaacta tctcaaaaat ggtgacccga atatggattt tttttttttt
351 ttatatgaaa aaaaaagaat tgttttgttg tgaatcaatt caaagttgaa
401 gaaaaaatcg aatattcatt gatcaaacca ttcactccat agtctgatag
451 atcttttcaa gaactgatta atcggacgag aataaagata gagtcccatt
501 ctacatgtca atagcgacaa caatgaaatt tatagtaaga tgaaaatccg
551 tcgacttaaa aaagtcgtga gggttcaagt ccctctatcc cc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.67e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
592 |
573 |
2.67e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.