Amplicon details

Amplicon:

592 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccctgg aattaaaaat
101   gggcaatcct gagccaaatc ctgttttacg agaacaaaca aaacaagagt
151   tcagaaagcg agaaaagggg gataggtgca gagactcaat ggaagctgtt
201   ctaacaaatg gagttcatta ccttgtgttg gtaaaggaat ccttctatcg
251   aacctccaga aaagatgaag ggataacctt atctaaatag gtataagtaa
301   tttaaaacta tctcaaaaat ggtgacccga atatggattt tttttttttt
351   ttatatgaaa aaaaaagaat tgttttgttg tgaatcaatt caaagttgaa
401   gaaaaaatcg aatattcatt gatcaaacca ttcactccat agtctgatag
451   atcttttcaa gaactgatta atcggacgag aataaagata gagtcccatt
501   ctacatgtca atagcgacaa caatgaaatt tatagtaaga tgaaaatccg
551   tcgacttaaa aaagtcgtga gggttcaagt ccctctatcc cc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
FJ467933.1 nt Carica papaya transgenic cultivar R... 15595 bp Carica papaya QL-PLN-00-007 592 bp View
FJ467933.1 emblreltgn Carica papaya transgenic cultivar R... 15595 bp Carica papaya QL-PLN-00-007 592 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.