Match details
Record ID: |
FJ466482.1 |
Database: |
nt |
Go to original record |
Description: |
Santiria apiculata tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Santiria apiculata |
Original size: |
1041 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
603 |
+ |
603 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aataaaaaat
101 gggcaatcct gagccaaatc ctgttttacg agaacaaaca agggttcaga
151 acacgagaaa ggggataggt gcagagactc aatggaagct gttctaacaa
201 atggagttga ctgccttttt ttgggaaaga aaggaaaatg aatccttcta
251 tccaatatcg aaactccata aaggatgaag gataagccta tatacactac
301 gtatacgtaa tgaaaaacta tctcaaaaat gacgaccaga atccgtattt
351 tttttatgaa aaaaaaagaa aagaattgtt gggaatcgat tccaagttga
401 agaaagaatc gaatattcat tgatcaaatc attcactcca tagtctgatc
451 gatcttttct tttgaagaac ttattaatcg gacgagaata aagatagagt
501 cccattctac atgtcaatag aaataccggc aacaatgaaa tttatagtaa
551 gaggaaaatc cgtcgacttt agaaatcgtg agggttcaag tccctctatc
601 ccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.72e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
603 |
584 |
2.72e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.