Match details
Record ID: |
FJ466471.1 |
Database: |
nt |
Go to original record |
Description: |
Canarium madagascariense tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Canarium madagascariense |
Original size: |
1040 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
602 |
+ |
602 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aataaaaaat
101 gggcaatcct gagccaaatc ctgttttacg agaacaaaca agggttcaga
151 acacgagaaa ggggataggt gcagagactc aatggaagct gttctaacaa
201 atggagttga ctgccttttt ttgggaaaga aaggaaaatg aatccttcta
251 tccaatatcg aaattccata aaggatgaag gataagccta tatacactac
301 gtatacgtaa tgaaaaacta tctcaaaaat gacgaccaga atccgtattt
351 tttttatgaa aaaaaagaaa agaattgttg ggaatcgatt ccaagttgaa
401 gaaagaatcg aatattcatt gatcaaatca ttcactccat agtctgatcg
451 atcttttctt ttgaagaact tattaattgg acgagaataa agatagagtc
501 ccattctaca tgtcaatagc aataccggca acaatgaaat ttatagtaag
551 aggaaaatcc gtcgacttta gaaatcgtga gggttcaagt ccctctatcc
601 cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.71e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
602 |
583 |
2.71e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.