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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AF387477.1 nt Amorphophallus zenkeri tRNA-Leu (tr... 576 bp Amorphophallus zenkeri QL-PLN-00-007 574 bp View
AF387479.1 nt Pseudodracontium lanceolatum tRNA-L... 599 bp Amorphophallus lanceolatus QL-PLN-00-007 597 bp View
AF387480.1 nt Anchomanes difformis tRNA-Leu (trnL... 591 bp Anchomanes difformis QL-PLN-00-007 589 bp View
AF430708.1 nt Caesalpinia bonduc chloroplast tRNA... 1078 bp Guilandina bonduc QL-PLN-00-007 597 bp View
AF430709.1 nt Caesalpinia cacalaco chloroplast tR... 1091 bp Caesalpinia cacalaco QL-PLN-00-007 597 bp View
AF430710.1 nt Caesalpinia calycina chloroplast tR... 1069 bp Erythrostemon calycinus QL-PLN-00-007 594 bp View
AF430711.1 nt Caesalpinia cassioides chloroplast ... 1077 bp Caesalpinia cassioides QL-PLN-00-007 605 bp View
AF430712.1 nt Caesalpinia caudata chloroplast tRN... 1045 bp Erythrostemon caudatus QL-PLN-00-007 596 bp View
AF430713.1 nt Caesalpinia colimensis chloroplast ... 1065 bp Caesalpinia colimensis QL-PLN-00-007 598 bp View
AF430714.1 nt Caesalpinia decapetala chloroplast ... 1089 bp Biancaea decapetala QL-PLN-00-007 615 bp View
AF430715.1 nt Caesalpinia eriostachys chloroplast... 1081 bp Cenostigma eriostachys QL-PLN-00-007 591 bp View
AF430716.1 nt Caesalpinia exilifolia chloroplast ... 1072 bp Erythrostemon exilifolius QL-PLN-00-007 592 bp View
AF430717.1 nt Caesalpinia exostemma chloroplast t... 1072 bp Erythrostemon exostemma QL-PLN-00-007 600 bp View
AF430718.1 nt Caesalpinia ferrea chloroplast tRNA... 1050 bp Libidibia ferrea QL-PLN-00-007 590 bp View
AF430720.1 nt Caesalpinia gracilis chloroplast tR... 1065 bp Caesalpinia gracilis QL-PLN-00-007 598 bp View
AF430721.1 nt Caesalpinia gilliesii chloroplast t... 1058 bp Erythrostemon gilliesii QL-PLN-00-007 596 bp View
AF430722.1 nt Caesalpinia glabrata chloroplast tR... 1059 bp Libidibia glabrata QL-PLN-00-007 597 bp View
AF430723.1 nt Caesalpinia hauthalii chloroplast t... 1071 bp Pomaria rubicunda var. hauthalii QL-PLN-00-007 598 bp View
AF430724.1 nt Caesalpinia hintonii chloroplast tR... 1074 bp Erythrostemon hintonii QL-PLN-00-007 596 bp View
AF430725.1 nt Caesalpinia hughesii chloroplast tR... 1071 bp Erythrostemon hughesii QL-PLN-00-007 600 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.