Match details
| Record ID: |
AF430721.1 |
| Database: |
nt |
Go to original record |
| Description: |
Caesalpinia gilliesii chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
| Taxon: |
Erythrostemon gilliesii |
| Original size: |
1058 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
596 |
+ |
596 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaata agagttcaga
151 aagggagaat aaaaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgacgaca tttcctttcg ttagtaaagg aatcctttca
251 tcgaaactcc agaaaagaaa ggatcaagga tgagcatata tatatatgta
301 tactgaaata ttatttcaat tgattagacc agacagacca aaaatatcta
351 ttttgtcata tttatatgac aaatgaaaga tgtgaataga ttccaagttg
401 aagaaagaat cgaatattta ttgatcaact cattcatttc atgatagtct
451 gataaatctt ttgaagaact gattaatcgg acgagaataa agatagagtc
501 ccattctaca tgttaatacc gacaacaatg aaatttatag taagaggaaa
551 atccgtcgac tttagaaatc gtgagggttc aagtccctct atcccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
596 |
577 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
