Match details
| Record ID: |
AF430715.1 |
| Database: |
nt |
Go to original record |
| Description: |
Caesalpinia eriostachys chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
| Taxon: |
Cenostigma eriostachys |
| Original size: |
1081 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
591 |
+ |
591 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaaga agagttcaga
151 aagggagaat aaaaaaggat aggtgcagag actcaacgga agctgttcta
201 acaaatggag ttgacgacat ttcgtttcgt tagtaaagga atccttccat
251 cgaaactcca gaaaagaaag gatcaaggat gaacatatat atacgtactg
301 aaacactatt tcaattgatt agaccagaca gaccccaaat ctctattttt
351 taatatttat atgacaaatg aaagatgtga ataggttcca agttgaagaa
401 agaatcgaat atttattgat caaatcattc actccatcat agtctgatag
451 atcttttgaa gaactgatta atcggacgag aataaagata gagtcccatt
501 ctacatgtca ataccgacaa caatgaaatt tatagtaaga ggaaaatccg
551 tcgactttag aaatcgkgag ggttcaagtc cctctatccc c
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.66e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
591 |
572 |
2.66e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
