Match details
| Record ID: |
AF430711.1 |
| Database: |
nt |
Go to original record |
| Description: |
Caesalpinia cassioides chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
| Taxon: |
Caesalpinia cassioides |
| Original size: |
1077 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
605 |
+ |
605 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaaga agagttcaga
151 aagggaaagg gagaataaaa aaaggatagg tgcagagact caacggaagc
201 tgttctaaca aatggagttg acgacatttt gtttcgttag taaaggaatc
251 cttccatcga aactccagaa aagaaaggat caaggatgaa catatatata
301 cgtactgaaa tactatttca attgattaag accagacaga ccccaaatct
351 ctatttttta atatttatat gacaaatgaa agatgtgaat agattccaag
401 ttgaagaaag aatcgaatat ttatatttat tgatcaaatc attcactcca
451 tcatagtctg atagatcttt tgaagaactg attaatcgga cgagaataaa
501 gatagagtcc cattctacat gtcaataccg acaacaatga aatttatagt
551 aagaggaaaa tccgtcgact ttagaaatcg tgagggttca agtccctcta
601 tcccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.73e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
605 |
586 |
2.73e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
