Match details
| Record ID: |
AF430712.1 |
| Database: |
nt |
Go to original record |
| Description: |
Caesalpinia caudata chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
| Taxon: |
Erythrostemon caudatus |
| Original size: |
1045 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
596 |
+ |
596 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgagagaact ttcaaattca gagaaaccct ggaattaaca
101 atgggcaatc ctgagccaaa tcctgttttc cgaaaaccaa taagagttca
151 gaaagggaga ataaaaaaag gataggtgca gagactcaac ggaagctgtt
201 ctaacaaatg gagttgacga catttccttt cgttagtaaa ggaatccttt
251 catcgaaact ccagaaaaga aaggatcaag gatgaacata tatatatgta
301 tactgaaata ttatttcagt tgattagacc agacagaccc caaatctcta
351 ttttttcata tttatatgac aaatgaaaga tgtgaataga ttccaagttg
401 aagaaagaat cgaatattta ttgatcaact cattcattcc atgatagtct
451 gataaatatt ttgaagaact gattaatcgg acgagaataa agatagagtc
501 ccattctaca tgtcaatacc gacaacaatg aaatttatag taagaggaaa
551 atccgtcgac tttagaaatc atgagggttc aagtccctct atcccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
596 |
577 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
