Match details
| Record ID: |
AF430714.1 |
| Database: |
nt |
Go to original record |
| Description: |
Caesalpinia decapetala chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
| Taxon: |
Biancaea decapetala |
| Original size: |
1089 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
615 |
+ |
615 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 atataccaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaaga agagttcaga
151 aagggagaat aaaaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgacgaca tttcctttcg ttagtaaagg aatccttcca
251 ttgaaactcc agaaaagaaa ggatcaagga tgaacatata tatacgtata
301 cgtactgaaa tactatttca attgattaga ccagacagac cccaaatctc
351 tattttttaa tatttatata acaaaaatat ttatataaca aatgaaagat
401 gtgaatagat tccaagttga agaaagaatc gaatatttat tgatcaaatc
451 attcactcca tcatagtctg atagatcttt tgaagaactg attaatcgga
501 cgagaataaa gatagagtcc cattctacat gtcaataccg acaacaatga
551 aatttatagt aagaggaaaa tccgtcgact ttagaaatcg tgagggttca
601 agtccctcta tcccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.77e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
615 |
596 |
2.77e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
