Match details
| Record ID: |
AF430724.1 |
| Database: |
nt |
Go to original record |
| Description: |
Caesalpinia hintonii chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
| Taxon: |
Erythrostemon hintonii |
| Original size: |
1074 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
596 |
+ |
596 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaata agagttcaga
151 aagggagaat aaaaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgacgaca tttcttttcg ttagtaaagg aattcttcca
251 tcgaaactcc agaaaagaaa ggatcaagga tgaacatata tatatatgta
301 tactgaaatc ttatttcaat tgattagacc agacagaccc ccaatctcta
351 ttttttaata tttatatgac aaatgaaaga tgtgaataga ttccaagttg
401 aagaaagaat caaatattta ttgatcaaat cattcattcc atgatagtct
451 gataaatctt ttgaagaact gattaatcgg acgagaataa agatagagtc
501 ccattctaca tgtcaatact gacaacaatg aaatttatag taagacgaaa
551 atccgtcgac tttagaaatc gtgagggttc aagtccctct atcccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
596 |
577 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
