Match details
| Record ID: |
AF430710.1 |
| Database: |
nt |
Go to original record |
| Description: |
Caesalpinia calycina chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
| Taxon: |
Erythrostemon calycinus |
| Original size: |
1069 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
594 |
+ |
594 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaata agagttcaga
151 aaggaagaat aaaaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgacaaca tttcctttcg ttagtaaagg aatccttcca
251 tcgaaactcc agaaaagaaa ggatcaagga tgaacatata tatatgtata
301 ctgaaatatt atttcaattg attagaccag acagacccca aatctctatt
351 ttttaatatt tatatgacaa atgaaagatg tgaatagatt ccaagttaaa
401 gaaagaattg aatatttatt gatcaactca ttcattccat gatagtctga
451 taaatctttt gaagaactga ttaatcggac gagaataaag atagagtccc
501 attctacatg tcaataccga caacaatgaa atttatagta agaggaaaat
551 ccgtcgactt tagaaatcgt gagggttcaa gtccctctat cccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
594 |
575 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
