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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DQ784684.1 nt Stryphnodendron racemiferum voucher... 1088 bp Stryphnodendron racemiferum QL-PLN-00-007 608 bp View
DQ787732.1 nt Viola albida voucher KWNU57210 tRNA... 950 bp Viola albida QL-PLN-00-007 552 bp View
DQ787733.1 nt Viola albida voucher KWNU57332 tRNA... 950 bp Viola albida QL-PLN-00-007 552 bp View
DQ787736.1 nt Viola x takahashii voucher KWNU5651... 959 bp Viola albida var. takahashii QL-PLN-00-007 553 bp View
DQ787738.1 nt Viola chaerophylloides voucher KWNU... 960 bp Viola chaerophylloides QL-PLN-00-007 555 bp View
DQ787739.1 nt Viola chaerophylloides voucher KWNU... 950 bp Viola chaerophylloides QL-PLN-00-007 552 bp View
DQ787741.1 nt Viola chaerophylloides voucher KWNU... 950 bp Viola chaerophylloides QL-PLN-00-007 552 bp View
DQ787742.1 nt Viola chaerophylloides voucher KWNU... 964 bp Viola chaerophylloides QL-PLN-00-007 559 bp View
DQ787743.1 nt Viola chaerophylloides voucher KWNU... 950 bp Viola chaerophylloides QL-PLN-00-007 552 bp View
DQ787744.1 nt Viola chaerophylloides voucher KWNU... 958 bp Viola chaerophylloides QL-PLN-00-007 553 bp View
DQ787747.1 nt Viola chaerophylloides voucher KWNU... 970 bp Viola chaerophylloides QL-PLN-00-007 563 bp View
DQ787748.1 nt Viola chaerophylloides voucher KWNU... 958 bp Viola chaerophylloides QL-PLN-00-007 553 bp View
DQ787750.1 nt Viola sieboldiana voucher KWNU56521... 985 bp Viola chaerophylloides var. sieboldiana QL-PLN-00-007 554 bp View
DQ787751.1 nt Viola eizanensis voucher KWNU56523 ... 960 bp Viola eizanensis QL-PLN-00-007 554 bp View
DQ787752.1 nt Viola dissecta voucher KWNU56518 tR... 954 bp Viola dissecta QL-PLN-00-007 548 bp View
DQ812106.1 nt Solanum glabratum voucher Bohs 2906... 1824 bp Solanum glabratum QL-PLN-00-007 571 bp View
DQ839446.1 nt Phtheirospermum japonicum isolate 0... 1665 bp Phtheirospermum japonicum QL-PLN-00-007 555 bp View
DQ860513.1 nt Alnus viridis tRNA-Leu (trnL) gene,... 607 bp Alnus alnobetula QL-PLN-00-007 607 bp View
DQ860514.1 nt Alopecurus borealis tRNA-Leu (trnL)... 615 bp Alopecurus magellanicus QL-PLN-00-007 615 bp View
DQ860515.1 nt Andromeda polifolia tRNA-Leu (trnL)... 566 bp Andromeda polifolia QL-PLN-00-007 566 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.