Match details
Record ID: |
DQ787750.1 |
Database: |
nt |
Go to original record |
Description: |
Viola sieboldiana voucher KWNU56521 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Viola chaerophylloides var. sieboldiana |
Original size: |
985 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
555 |
+ |
554 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tggataactt tcaaattcag agaaaccctg gaataaaaaa
101 ggggcaatcc tgagccaaat ccgatttttt gaaatgaaaa aaaaagttta
151 tatagacaga ataaataaaa aaggataggt gcagagactc aatggaagct
201 gttctaataa atggagttga ctgtcttgca ttagtaaagt aagggaacct
251 ttcgttaaaa ttgcggattc aaagtaaagg ataaccctat aaatacatat
301 acgtactgaa agactatctc aaataattaa tgtaattatg aaaaataaaa
351 taaaaatatt gaatcgattt caagtttaag aaaaaatcga ttgatcaaat
401 cattcactcc acagtctgat aaataactaa ttaatcggac gagaataaag
451 atagagtccc attctacatg ttaatattga caacaaggaa atttatagta
501 agaggaaaat ccgtcgactt tagaaatcgt gagggttcaa gtccctctat
551 cccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.49e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
554 |
535 |
2.49e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.