Match details
Record ID: |
DQ787742.1 |
Database: |
nt |
Go to original record |
Description: |
Viola chaerophylloides voucher KWNU56516 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Viola chaerophylloides |
Original size: |
964 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
560 |
+ |
559 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tggataactt tcaaattcag agaaaccctg gaataaaaaa
101 ggggtaatcc tgagccaaat ccgatttttt gaaatgaaaa aagtttatat
151 agttatatag acagaataaa taaaaaagga taggtgcaga gactcaatgg
201 aagctgttct aataaatgga gttgactgtc ttgcattagt aaagtaaggg
251 aacctttcgt taaaattgcg gattcaaagt aaaggataac cctataaata
301 catatacgta ctgaaagact atctcaaata attaatgtaa ttatgaaaaa
351 taaaataaaa atattgaatc gatttcaagt tgaagaaaaa atcgattgat
401 caaatcattc actccacagt ctgataaata actaattaat cggacgagaa
451 taaagataga gtcccattct acatgttaat attgacaaca aggaaattta
501 tagtaagagg aaaatccgtc gactttagaa atcgtgaggg ttcaagtccc
551 tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.52e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
559 |
540 |
2.52e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.