Match details
Record ID: |
DQ787733.1 |
Database: |
nt |
Go to original record |
Description: |
Viola albida voucher KWNU57332 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Viola albida |
Original size: |
950 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
553 |
+ |
552 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tggataactt tcaaattcag agaaaccctg gaataaaaaa
101 ggggcaatcc tgagccaaat ccgatttttt gaaatgaaaa aaagtttata
151 tagacagaat aaataaaaaa ggataggtgc agagactcaa tggaagctgt
201 tctaataaat ggagttgatt gtcttgcatt agtaaagtaa gggaaccttt
251 cgttaaaatt gcggattcaa agtaaaggat aaccctataa atacatatac
301 gtactgaaag actatctcaa ataattaatg taattatgaa aaataaaata
351 aaaatattga atcgatttca agttgaagaa aaaatcaatt gatcaaatca
401 ttcactccac agtctgataa ataactaatt aatcggacga gaataaagat
451 agagtcccat tctacatgtt aatattgaca acaaggaaat ttatagtaag
501 aggaaaatcc gtcgacttta gaaatcgtga gggttcaagt ccctctatcc
551 cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.48e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
552 |
533 |
2.48e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.