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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AF327573.1 nt Alnus glutinosa tRNA-Leu (trnL) gen... 609 bp Alnus glutinosa QL-PLN-00-007 609 bp View
AF327576.1 nt Acer pseudoplatanus tRNA-Leu (trnL)... 596 bp Acer pseudoplatanus QL-PLN-00-007 596 bp View
AF327577.1 nt Alnus viridis tRNA-Leu (trnL) gene,... 607 bp Alnus alnobetula QL-PLN-00-007 607 bp View
AF327579.1 nt Carpinus betulus tRNA-Leu (trnL) ge... 606 bp Carpinus betulus QL-PLN-00-007 606 bp View
AF327580.1 nt Castanea sativa tRNA-Leu (trnL) gen... 559 bp Castanea sativa QL-PLN-00-007 559 bp View
AF327581.1 nt Fraxinus excelsior tRNA-Leu (trnL) ... 548 bp Fraxinus excelsior QL-PLN-00-007 548 bp View
AF327582.1 nt Fagus sylvatica tRNA-Leu (trnL) gen... 611 bp Fagus sylvatica QL-PLN-00-007 611 bp View
AF327583.1 nt Ginkgo biloba tRNA-Leu (trnL) gene,... 574 bp Ginkgo biloba QL-PLN-00-007 574 bp View
AF327584.1 nt Larix decidua tRNA-Leu (trnL) gene,... 550 bp Larix decidua QL-PLN-00-007 550 bp View
AF327585.1 nt Picea abies tRNA-Leu (trnL) gene, i... 562 bp Picea abies QL-PLN-00-007 562 bp View
AF327586.1 nt Prunus avium tRNA-Leu (trnL) gene, ... 590 bp Prunus avium QL-PLN-00-007 590 bp View
AF327588.1 nt Pinus cembra tRNA-Leu (trnL) gene, ... 563 bp Pinus cembra QL-PLN-00-007 563 bp View
AF327589.1 nt Pseudotsuga menziesii tRNA-Leu (trn... 550 bp Pseudotsuga menziesii QL-PLN-00-007 550 bp View
AF327590.1 nt Pinus mugo tRNA-Leu (trnL) gene, in... 553 bp Pinus mugo QL-PLN-00-007 553 bp View
AF327592.1 nt Pinus sylvestris tRNA-Leu (trnL) ge... 553 bp Pinus sylvestris QL-PLN-00-007 553 bp View
AF327594.1 nt Quercus petraea tRNA-Leu (trnL) gen... 558 bp Quercus petraea QL-PLN-00-007 558 bp View
AF327596.1 nt Sorbus aucuparia tRNA-Leu (trnL) ge... 590 bp Sorbus aucuparia QL-PLN-00-007 590 bp View
AF327598.1 nt Taxus baccata tRNA-Leu (trnL) gene,... 522 bp Taxus baccata QL-PLN-00-007 522 bp View
AF327601.1 nt Ulmus glabra tRNA-Leu (trnL) gene, ... 598 bp Ulmus glabra QL-PLN-00-007 598 bp View
AF387434.1 nt Amorphophallus ankarana tRNA-Leu (t... 562 bp Amorphophallus ankarana QL-PLN-00-007 560 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.