Match details
Record ID: |
AF327586.1 |
Database: |
nt |
Go to original record |
Description: |
Prunus avium tRNA-Leu (trnL) gene, intron; chloroplast gene for chloroplast product. |
Taxon: |
Prunus avium |
Original size: |
590 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
590 |
+ |
590 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgagaacttt caaattcaga gaaaccctgg aattaaaaat
101 gggcgatcct gagccaaatc ctgttttatt aaaacaaaca agggtttcat
151 aaaccgagaa taaaaaagga taggtgcaga gactcaatgg aagctgttct
201 aacaaatgga gttggctgca ttgtgttagt aaaggaatcc ttacatcgaa
251 acttccgaaa ggatgaagga taaacctata tgcatacgta tagtactgca
301 atactatctc caaatgatta atgacggccc gaatctttat tttttgatat
351 ttatatgaaa aatgaaagaa ttgttgtgaa tcgattaaaa attgaaaaaa
401 gaatagaata ttcattgatc aaatcattca ctccatcata gtctgataga
451 tctttttaag aattgattaa tcggacgaga ataaagatag agtcccatta
501 tacatgtcaa tatcgacaac aatgaaattt atagtaagag gaaaatccgt
551 cgactttaga aatcgtgagg gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.66e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
590 |
571 |
2.66e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.