Match details
Record ID: |
AF327588.1 |
Database: |
nt |
Go to original record |
Description: |
Pinus cembra tRNA-Leu (trnL) gene, intron; chloroplast gene for chloroplast product. |
Taxon: |
Pinus cembra |
Original size: |
563 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
563 |
+ |
563 bp |
|
1 cgaaatcggt agacgctacg gacttgatcg aattgagcct tggtatggaa
51 acctaccaag tgatagcttc caaatccagg gaaccctggg atattttgaa
101 tgggtaatcc tgagccaaat ccggttcatg aagacaatgt ttcttctcct
151 aagataggaa ggggataggt gcagagactc aatggaagct attctaacga
201 atgaatctca tttggtccaa tactgtagtt atagaacgct ctatttacac
251 ctcaaaagtg gagagatatt ttatataaca tcagacaaaa ctggactggc
301 gatcagaact tgaatcgttc caagcatttt attcataaga tagatgccag
351 attcgagttg aagtactgat ttgacattaa gtaatccaat tatgaactta
401 tctactctag atggaaaatt gaatcagttt ttggaataaa tggttggacg
451 aggataaaga tagagtccaa ttctacatgt caatgtcaac aacaatgcaa
501 attgcagtag gaggaaaatc cgttggcttt atagaccgtg agggttcaag
551 tccctctatc ccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
563 |
544 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.